ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6p4eA1 - ECOD Domain | ECOD

ECOD/Domains/e6p4eA1

e6p4eA1

UID: 002631909

PDB

Range: A:2-217
PDB: 6P4E chain A(all domains)
UniProt: P36400 (all domains)
Gene: LMCPB

Molecule: Cysteine proteinase B

3D Structure

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Related Domains

Browse other domains in Peptidase_C1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C1(219.1.1.1)

Ligands

in contact, ≤ 4 Å

3-tert-butyl-N-[(2S)-1-(2-cyano-1,2-dimethylhydrazinyl)-4-methyl-1-oxopentan-2-yl]-1-methyl-1H-pyrazole-5-carboxamide (non-preferred name)GES
Sodium ionNA
metal

+ 2 additives (Acetate, (4r)-2-Methylpentane-2,4-Diol)

AcetateACT

Pfam Families

PF00112Peptidase_C1

Papain family cysteine protease

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 6P4E RCSB PDB: 6P4E PDBe: 6P4E UniProt: P36400

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.