ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5qy8A1 - ECOD Domain | ECOD

ECOD/Domains/e5qy8A1

e5qy8A1

UID: 002632866

PDB

Range: A:1833-2069
PDB: 5QY8 chain A(all domains)
UniProt: P33334 (all domains)
Gene: PRP8

Molecule: Pre-mRNA-splicing factor 8

3D Structure

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Related Domains

Browse other domains in PRP8_domainIV →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyPRP8_domainIV(2484.1.1.62)

Ligands

in contact, ≤ 4 Å

(R)-Propylene glycolPGR
drugDrugBank DB02159
1,3-benzodioxole-5-carbothioamideTJV

+ 1 additive (Sulfate ion)

Sulfate ion

Pfam Families

PF12134PRP8_domainIV

PRP8 domain IV core

ClanCL0219RNase_H

External Links

ECOD PDB View: 5QY8 RCSB PDB: 5QY8 PDBe: 5QY8 UniProt: P33334

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.