ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5rbsA1 - ECOD Domain | ECOD

ECOD/Domains/e5rbsA1

e5rbsA1

UID: 002633464

PDB

Range: A:1-178
PDB: 5RBS chain A(all domains)
UniProt: P11838 (all domains)
Gene: EAPA

Molecule: Endothiapepsin

3D Structure

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Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

(3S)-3-hydroxy-2-methyl-2,3-dihydro-1H-isoindol-1-oneR8V

+ 2 additives (Dimethyl sulfoxide, Tetraethylene glycol)

Dimethyl sulfoxideDMS
Tetraethylene glycolPG4

Shown in the structure viewer.

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 5RBS RCSB PDB: 5RBS PDBe: 5RBS UniProt: P11838

Downloads

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Drug annotations from DrugDomain.