ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ryuV1 - ECOD Domain | ECOD

ECOD/Domains/e6ryuV1

e6ryuV1

UID: 002634084

PDB

Range: V:967-1416
PDB: 6RYU chain V(all domains)
UniProt: Q14839 (all domains)
Gene: CHD4

Molecule: Chromodomain-helicase-DNA-binding protein 4,CHD4,Chromodomain-helicase-DNA-binding protein 4

3D Structure

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Related Domains

Browse other domains in SNF2-rel_dom, Helicase_C, HDA2-3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySNF2-rel_dom, Helicase_C, HDA2-3(2004.1.1.428)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid-adenylate esterANP
Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00176SNF2-rel_dom

SNF2-related domain

ClanCL0023P-loop_NTPase

PF00271Helicase_C

Helicase conserved C-terminal domain

ClanCL0023P-loop_NTPase

Class II histone deacetylase complex subunits 2 and 3

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6RYU RCSB PDB: 6RYU PDBe: 6RYU UniProt: Q14839

Downloads

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