ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6s48B1 - ECOD Domain | ECOD

ECOD/Domains/e6s48B1

e6s48B1

UID: 002634196

PDB

Range: B:4-231
PDB: 6S48 chain B(all domains)
UniProt: Q8YYB7 (all domains)

Molecule: Type II site-specific deoxyribonuclease

3D Structure

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Related Domains

Browse other domains in RE_SinI →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyRE_SinI(2008.1.1.49)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
SerineSER
drugDrugBank DB00133
Calcium ion

Pfam Families

PF09570RE_SinI

SinI restriction endonuclease

ClanCL0236PDDEXK

External Links

ECOD PDB View: 6S48 RCSB PDB: 6S48 PDBe: 6S48 UniProt: Q8YYB7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Triethylene glycol, Pentaethylene glycol)

Triethylene glycolPGE
DrugBank DB02327
Pentaethylene glycol1PE

Shown in the structure viewer. Drug annotations from DrugDomain.