ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6slnC1 - ECOD Domain | ECOD

ECOD/Domains/e6slnC1

e6slnC1

UID: 002634656

PDB

Range: C:20-500
PDB: 6SLN chain C(all domains)
UniProt: F5H948 (all domains)
Gene: ragB

Molecule: Lipoprotein RagB

3D Structure

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Related Domains

Browse other domains in SusD family / Starch-binding associating with outer membrane →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilySusD family / Starch-binding associating with outer membrane(109.4.1.105)

Ligands

in contact, ≤ 4 Å

Palmitic AcidPLM
drugDrugBank DB03796
1,2-Distearoyl-sn-glycerophosphoethanolamine3PE

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltoside

Pfam Families

PF07980SusD_RagB

SusD family

ClanCL0020TPR

PF14322SusD-like_3

Starch-binding associating with outer membrane

ClanCL0020TPR

External Links

ECOD PDB View: 6SLN RCSB PDB: 6SLN PDBe: 6SLN UniProt: F5H948

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.