ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6tghB1 - ECOD Domain | ECOD

ECOD/Domains/e6tghB1

e6tghB1

UID: 002635009

PDB

Range: B:7-280
PDB: 6TGH chain B(all domains)
UniProt: Q5M0B4 (all domains)
Gene: glyA

Molecule: Serine hydroxymethyltransferase

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

D-SerineDSN
drugDrugBank DB03929
Pyridoxal phosphatePLP
drugDrugBank DB00114
L-Serine, N-[[3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]-4-pyridinyl]methylene]

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 6TGH RCSB PDB: 6TGH PDBe: 6TGH UniProt: Q5M0B4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sodium ionNA

metal

Shown in the structure viewer. Drug annotations from DrugDomain.