ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6w5eA2 - ECOD Domain | ECOD

ECOD/Domains/e6w5eA2

e6w5eA2

UID: 002637499

PDB

Range: A:55-95,A:193-292
PDB: 6W5E chain A(all domains)
UniProt: P54427 (all domains)
Gene: ybxI

Molecule: BSU-2 beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (1,2-ETHANEDIOL, Malonate ion)

1,2-ETHANEDIOLEDO
Malonate ionMLI

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6W5E RCSB PDB: 6W5E PDBe: 6W5E UniProt: P54427

Downloads

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