ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6w5fD2 - ECOD Domain | ECOD

ECOD/Domains/e6w5fD2

e6w5fD2

UID: 002637507

PDB

Range: D:56-95,D:193-289
PDB: 6W5F chain D(all domains)
UniProt: P54427 (all domains)
Gene: ybxI

Molecule: BSU-2delta mutant

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Malonate Ion, 1,2-ETHANEDIOL)

Malonate IonMLI
DrugBank DB02201
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6W5F RCSB PDB: 6W5F PDBe: 6W5F UniProt: P54427

Downloads

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