ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1m5qW1 - ECOD Domain | ECOD

ECOD/Domains/e1m5qW1

e1m5qW1

UID: 000026377

PDB

Range: W:12-76
PDB: 1M5Q chain W(all domains)
UniProt: Q8ZVU2 (all domains)
Gene: PAE2122

Molecule: small nuclear ribonucleoprotein homolog

3D Structure

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Related Domains

Browse other domains in LSM →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyLSM(4.1.1.19)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal

+ 2 additives (Acetic acid, Glycerin)

Acetic acidACY
DrugBank DB03166
Glycerin

Pfam Families

LSM domain

ClanCL0986Sm-like

External Links

ECOD PDB View: 1M5Q RCSB PDB: 1M5Q PDBe: 1M5Q UniProt: Q8ZVU2

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.