ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1m5qV1 - ECOD Domain | ECOD

ECOD/Domains/e1m5qV1

e1m5qV1

UID: 000026389

PDB

Range: V:12-76
PDB: 1M5Q chain V(all domains)
UniProt: Q8ZVU2 (all domains)
Gene: PAE2122

Molecule: small nuclear ribonucleoprotein homolog

3D Structure

Loading viewer...

Related Domains

Browse other domains in LSM →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyLSM(4.1.1.19)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal
Sodium ionNA
metal

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

LSM domain

ClanCL0986Sm-like

External Links

ECOD PDB View: 1M5Q RCSB PDB: 1M5Q PDBe: 1M5Q UniProt: Q8ZVU2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.