ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6wugA1 - ECOD Domain | ECOD

ECOD/Domains/e6wugA1

e6wugA1

UID: 002640183

PDB

Range: A:1-208,A:231-352
PDB: 6WUG chain A(all domains)
UniProt: O13836 (all domains)
Gene: din1

Molecule: Decapping nuclease din1

3D Structure

Loading viewer...

Related Domains

Browse other domains in RAI1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyRAI1(2008.1.1.27)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)UBG

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

RAI1 like PD-(D/E)XK nuclease

ClanCL0236PDDEXK

External Links

ECOD PDB View: 6WUG RCSB PDB: 6WUG PDBe: 6WUG UniProt: O13836

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.