ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wuiA1 - ECOD Domain | ECOD

ECOD/Domains/e6wuiA1

e6wuiA1

UID: 002640184

PDB

Range: A:0-208,A:231-352
PDB: 6WUI chain A(all domains)
UniProt: O13836 (all domains)
Gene: din1

Molecule: Decapping nuclease din1

3D Structure

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Related Domains

Browse other domains in RAI1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyRAI1(2008.1.1.27)

Ligands

in contact, ≤ 4 Å

[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)UBG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

RAI1 like PD-(D/E)XK nuclease

ClanCL0236PDDEXK

External Links

ECOD PDB View: 6WUI RCSB PDB: 6WUI PDBe: 6WUI UniProt: O13836

Downloads

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