ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6xbrA1 - ECOD Domain | ECOD

ECOD/Domains/e6xbrA1

e6xbrA1

UID: 002640657

PDB

Range: A:1-67
PDB: 6XBR chain A(all domains)
UniProt: Q9L2C2 (all domains)
Gene: SCO5398

Molecule: Methylmalonyl-CoA epimerase

3D Structure

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Related Domains

Browse other domains in Glyoxalase_4 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupGlyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase(211)

HH-groupGlyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase(211.1)

TT-groupGlyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase(211.1.1)

FFamilyGlyoxalase_4(211.1.1.7)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
COBALT (II) IONCO
metal
[1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azanium

Pfam Families

PF13669Glyoxalase_4

Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

ClanCL0104Glyoxalase

External Links

ECOD PDB View: 6XBR RCSB PDB: 6XBR PDBe: 6XBR UniProt: Q9L2C2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Sulfate ion, Ammonium ion)

Sulfate ionSO4
DrugBank DB14546
Ammonium ionNH4

Shown in the structure viewer. Drug annotations from DrugDomain.