ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yeoA2 - ECOD Domain | ECOD

ECOD/Domains/e6yeoA2

e6yeoA2

UID: 002641625

PDB

Range: A:60-223
PDB: 6YEO chain A(all domains)
UniProt: P00811 (all domains)
Gene: ampC

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Beta-lactamase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyBeta-lactamase(4019.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
(4~{R})-4-[[4-(aminomethyl)phenyl]carbonylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acidOK3

+ 2 additives (HEPES, (4r)-2-Methylpentane-2,4-Diol)

HEPESEPE

Pfam Families

PF00144Beta-lactamase

Beta-lactamase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6YEO RCSB PDB: 6YEO PDBe: 6YEO UniProt: P00811

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB16872

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.