ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ypeB1 - ECOD Domain | ECOD

ECOD/Domains/e6ypeB1

e6ypeB1

UID: 002641684

PDB

Range: B:225-429
PDB: 6YPE chain B(all domains)
UniProt: Q15818 (all domains)
Gene: NPTX1

Molecule: Neuronal pentraxin-1

3D Structure

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Related Domains

Browse other domains in Pentaxin →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyPentaxin(10.1.1.5)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00354Pentaxin

Pentaxin family

ClanCL0004Concanavalin

External Links

ECOD PDB View: 6YPE RCSB PDB: 6YPE PDBe: 6YPE UniProt: Q15818

Downloads

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