ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yrwC1 - ECOD Domain | ECOD

ECOD/Domains/e6yrwC1

e6yrwC1

UID: 002641699

PDB

Range: C:281-416
PDB: 6YRW chain C(all domains)
UniProt: Q5M0B4 (all domains)
Gene: glyA

Molecule: Serine hydroxymethyltransferase

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilySHMT(3016.1.1.5)

Ligands

in contact, ≤ 4 Å

D-SerineDSN
drugDrugBank DB03929

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462within 5 Å only

Shown in the structure viewer.

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 6YRW RCSB PDB: 6YRW PDBe: 6YRW UniProt: Q5M0B4

Downloads

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Drug annotations from DrugDomain.