ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6yrwB2 - ECOD Domain | ECOD

ECOD/Domains/e6yrwB2

e6yrwB2

UID: 002641702

PDB

Range: B:7-280
PDB: 6YRW chain B(all domains)
UniProt: Q5M0B4 (all domains)
Gene: glyA

Molecule: Serine hydroxymethyltransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

D-SerineDSN
drugDrugBank DB03929
Pyridoxal phosphatePLP
drugDrugBank DB00114

+ 1 additive (Glycerin)

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 6YRW RCSB PDB: 6YRW PDBe: 6YRW UniProt: Q5M0B4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.