ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yt4B1 - ECOD Domain | ECOD

ECOD/Domains/e6yt4B1

e6yt4B1

UID: 002641712

PDB

Range: B:3-271
PDB: 6YT4 chain B(all domains)
UniProt: N0DKS8 (all domains)
Gene: NaR

Molecule: Sodium pumping rhodopsin

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

EicosaneLFA
Sodium ionNA
metal
Oleic acidOLA
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 6YT4 RCSB PDB: 6YT4 PDBe: 6YT4 UniProt: N0DKS8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

RetinalRET

+ 1 additive (octyl beta-D-glucopyranoside)

octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.