ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yjwA2 - ECOD Domain | ECOD

ECOD/Domains/e6yjwA2

e6yjwA2

UID: 002642770

PDB

Range: A:120-365
PDB: 6YJW chain A(all domains)
UniProt: Q9M602 (all domains)
Gene: omt1

Molecule: O-methyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_2(2003.1.5.3)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 2 additives (HEPES, 1,2-ETHANEDIOL)

HEPESEPE
DrugBank DB16872

Pfam Families

PF00891Methyltransf_2

O-methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6YJW RCSB PDB: 6YJW PDBe: 6YJW UniProt: Q9M602

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.