ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wcoA1 - ECOD Domain | ECOD

ECOD/Domains/e6wcoA1

e6wcoA1

UID: 002643765

PDB

Range: A:1-186
PDB: 6WCO chain A(all domains)
UniProt: P0C6X7 (all domains)
Gene: rep

Molecule: Main protease

3D Structure

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Related Domains

Browse other domains in Peptidase_C30 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_C30(1.1.5.19)

Ligands

in contact, ≤ 4 Å

N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclopentylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamideX47

+ 2 additives (Dimethyl sulfoxide, 2-(N-morpholino)ethanesulfonic acid)

Dimethyl sulfoxideDMS
DrugBank DB01093
2-(N-morpholino)ethanesulfonic acid

Pfam Families

PF05409Peptidase_C30

Coronavirus endopeptidase C30

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 6WCO RCSB PDB: 6WCO PDBe: 6WCO UniProt: P0C6X7

Downloads

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DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.