ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yj4B1 - ECOD Domain | ECOD

ECOD/Domains/e6yj4B1

e6yj4B1

UID: 002644079

PDB

Range: B:34-210
PDB: 6YJ4 chain B(all domains)
UniProt: Q9UUT7 (all domains)
Gene: nukm

Molecule: Subunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I)

3D Structure

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Related Domains

Browse other domains in Oxidored_q6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupCheY-like(2007.1.3)

FFamilyOxidored_q6(2007.1.3.3)

Ligands

in contact, ≤ 4 Å

NADPHNDP
drugDrugBank DB02338
Diundecyl Phosphatidyl CholinePLC
drugDrugBank DB02777

Pfam Families

PF01058Oxidored_q6

NADH ubiquinone oxidoreductase, 20 Kd subunit

ClanCL0304CheY

External Links

ECOD PDB View: 6YJ4 RCSB PDB: 6YJ4 PDBe: 6YJ4 UniProt: Q9UUT7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-Distearoyl-sn-glycerophosphoethanolamine

Iron/sulfur clusterSF4

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.