ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6t40B1 - ECOD Domain | ECOD

ECOD/Domains/e6t40B1

e6t40B1

UID: 002644333

PDB

Range: B:1-244
PDB: 6T40 chain B(all domains)
UniProt: Q2LKZ0 (all domains)

Molecule: VP2

3D Structure

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Related Domains

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Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4
DrugBank DB14546
Glycerol

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6T40 RCSB PDB: 6T40 PDBe: 6T40 UniProt: Q2LKZ0

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.