ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wyaA5 - ECOD Domain | ECOD

ECOD/Domains/e6wyaA5

e6wyaA5

UID: 002644429

PDB

Range: A:346-434,A:486-590
PDB: 6WYA chain A(all domains)
UniProt: D0VWU9 (all domains)

Molecule: DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyDNA_pol_B(304.48.1.3)

Ligands

in contact, ≤ 4 Å

2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosineDZ4
Magnesium ionMG
metal

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

AcetateACT

Pfam Families

PF00136DNA_pol_B

DNA polymerase family B

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 6WYA RCSB PDB: 6WYA PDBe: 6WYA UniProt: D0VWU9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.