ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yssy1 - ECOD Domain | ECOD

ECOD/Domains/e6yssy1

e6yssy1

UID: 002644546

PDB

Range: y:2-140
PDB: 6YSS chain y(all domains)
UniProt: A0A024L8R9 (all domains)
Gene: arfB

Molecule: Alternative stalled-ribosome rescue factor B

3D Structure

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Related Domains

Browse other domains in RF-1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupPeptidyl-tRNA hydrolase domain-like(330.3)

TT-groupPeptidyl-tRNA hydrolase domain-like(330.3.1)

FFamilyRF-1(330.3.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

RF-1 domain

ClanCL0337RF

External Links

ECOD PDB View: 6YSS RCSB PDB: 6YSS PDBe: 6YSS UniProt: A0A024L8R9

Downloads

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