ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6ynkA1 - ECOD Domain | ECOD

ECOD/Domains/e6ynkA1

e6ynkA1

UID: 002647875

PDB

Range: A:344-507
PDB: 6YNK chain A(all domains)
UniProt: Q96MU7 (all domains)
Gene: YTHDC1

Molecule: YTHDC1

3D Structure

Loading viewer...

Related Domains

Browse other domains in YTH →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupPUA domain(1.1.9)

FFamilyYTH(1.1.9.8)

Ligands

in contact, ≤ 4 Å

6-[[furan-2-ylmethyl(methyl)amino]methyl]-5~{H}-pyrimidine-2,4-dioneP0K

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

YT521-B-like domain

ClanCL0178PUA

External Links

ECOD PDB View: 6YNK RCSB PDB: 6YNK PDBe: 6YNK UniProt: Q96MU7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure