ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7jivA1 - ECOD Domain | ECOD

ECOD/Domains/e7jivA1

e7jivA1

UID: 002648751

PDB

Range: A:61-315
PDB: 7JIV chain A(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: Papain-like protease

3D Structure

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Related Domains

Browse other domains in CoV_peptidase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyCoV_peptidase(219.1.1.43)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
5-(acryloylamino)-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamideVBY
Zinc ionZN

Pfam Families

PF08715CoV_peptidase

Coronavirus papain-like peptidase

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 7JIV RCSB PDB: 7JIV PDBe: 7JIV UniProt: P0DTD1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Acetate, 2-(N-morpholino)ethanesulfonic acid)

AcetateACT
DrugBank DB14511
2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.