ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6kmaD1 - ECOD Domain | ECOD

ECOD/Domains/e6kmaD1

e6kmaD1

UID: 002649544

PDB

Range: D:87-503
PDB: 6KMA chain D(all domains)
UniProt: A0A3Q0L1E1 (all domains)
Gene: sucA

Molecule: Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component

3D Structure

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Related Domains

Browse other domains in E1_dh →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyE1_dh(7574.1.1.2)

Ligands

in contact, ≤ 4 Å

2-oxidanylethanalDW3
Magnesium ionMG
metal
Hexaethylene glycolP6G

Pfam Families

Dehydrogenase E1 component

ClanCL0254THDP-binding

External Links

ECOD PDB View: 6KMA RCSB PDB: 6KMA PDBe: 6KMA UniProt: A0A3Q0L1E1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Thiamine diphosphateTPP

Calcium ionCA

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.