ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ld2A1 - ECOD Domain | ECOD

ECOD/Domains/e6ld2A1

e6ld2A1

UID: 002649963

PDB

Range: A:273-455,A:476-702
PDB: 6LD2 chain A(all domains)
UniProt: A0A024B7W1 (all domains)

Molecule: RNA-directed RNA polymerase NS5

3D Structure

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Related Domains

Browse other domains in Flavi_NS5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyFlavi_NS5(304.48.1.13)

Ligands

in contact, ≤ 4 Å

(1S,2S,4S,5R)-2,4-dimethoxy-5-thiophen-2-yl-cyclohexane-1-carboxylic acidKY3
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00972Flavi_NS5

Flavivirus RNA-directed RNA polymerase, fingers and palm domains

ClanCL0027RdRP

External Links

ECOD PDB View: 6LD2 RCSB PDB: 6LD2 PDBe: 6LD2 UniProt: A0A024B7W1

Downloads

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