ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6t8rA1 - ECOD Domain | ECOD

ECOD/Domains/e6t8rA1

e6t8rA1

UID: 002651361

PDB

Range: A:1-172
PDB: 6T8R chain A(all domains)
UniProt: Q04544 (all domains)
Gene: ORF1

Molecule: Genome polyprotein

3D Structure

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Related Domains

Browse other domains in Peptidase_C37 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_C37(1.1.5.20)

Ligands

in contact, ≤ 4 Å

4-(5-amino-1,3,4-thiadiazol-2-yl)phenolGVY

+ 2 additives (Dimethyl sulfoxide, Phosphate ion)

Dimethyl sulfoxideDMS
DrugBank DB01093
Phosphate ionPO4

Pfam Families

PF05416Peptidase_C37

Southampton virus-type processing peptidase

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 6T8R RCSB PDB: 6T8R PDBe: 6T8R UniProt: Q04544

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.