ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6tdeC2 - ECOD Domain | ECOD

ECOD/Domains/e6tdeC2

e6tdeC2

UID: 002651619

PDB

Range: C:1-244
PDB: 6TDE chain C(all domains)
UniProt: D0VWZ0 (all domains)

Molecule: Tubulin alpha chain

3D Structure

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Related Domains

Browse other domains in Tubulin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupTubulin nucleotide-binding domain-like(2003.1.6)

FFamilyTubulin(2003.1.6.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Magnesium ionMG
metal
~{N}-[(10~{S})-3,4,5-trimethoxy-16-methylidene-14-oxatetracyclo[9.7.0.0^{2,7}.0^{13,17}]octadeca-1(18),2,4,6,11,13(17)-hexaen-10-yl]ethanamide

Pfam Families

PF00091Tubulin

Tubulin/FtsZ family, GTPase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6TDE RCSB PDB: 6TDE PDBe: 6TDE UniProt: D0VWZ0

Downloads

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+ 1 additive (Sulfate ion)

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.