ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6uu3CCC6 - ECOD Domain | ECOD

ECOD/Domains/e6uu3CCC6

e6uu3CCC6

UID: 002652622

PDB

Range: CCC:791-827,CCC:1063-1239
PDB: 6UU3 chain CCC(all domains)
UniProt: P0A8V4 (all domains)
Gene: rpoB

Molecule: DNA-directed RNA polymerase subunit beta

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_6 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb2_6(1.1.2.1)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-TriphosphateCTP
drugDrugBank DB02431
Cyclic 3',5'-thymidine monophosphateD4M
drugDrugBank DB04672

Pfam Families

PF00562RNA_pol_Rpb2_6

RNA polymerase Rpb2, domain 6

ClanCL0410LEF-8-like

External Links

ECOD PDB View: 6UU3 RCSB PDB: 6UU3 PDBe: 6UU3 UniProt: P0A8V4

Downloads

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Magnesium ionMG

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.