ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vc7E1 - ECOD Domain | ECOD

ECOD/Domains/e6vc7E1

e6vc7E1

UID: 002652996

PDB

Range: E:243-586
PDB: 6VC7 chain E(all domains)
UniProt: P40709 (all domains)
Gene: pbgA

Molecule: Periplasmic domain of the cardiolipin transporter protein YejM/PbgA

3D Structure

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Related Domains

Browse other domains in Sulfatase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupAlkaline phosphatase-like(7515)

HH-groupAlkaline phosphatase-like(7515.1)

TT-groupAlkaline phosphatase-like(7515.1.1)

FFamilySulfatase(7515.1.1.2)

Ligands

in contact, ≤ 4 Å

EthanolamineETA
drugDrugBank DB03994
Potassium ionK
metal
Magnesium ionMG

Pfam Families

PF00884Sulfatase

Sulfatase

ClanCL0088Alk_phosphatase

External Links

ECOD PDB View: 6VC7 RCSB PDB: 6VC7 PDBe: 6VC7 UniProt: P40709

Downloads

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metal

+ 4 additives (Triethylene glycol, Pentaethylene glycol, 1,2-ETHANEDIOL, …)

Triethylene glycolPGE
DrugBank DB02327within 5 Å only
Pentaethylene glycol1PE
1,2-ETHANEDIOLEDO
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.