ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6x9fB2 - ECOD Domain | ECOD

ECOD/Domains/e6x9fB2

e6x9fB2

UID: 002657281

PDB

Range: B:8-97
PDB: 6X9F chain B(all domains)
UniProt: Q9HW02 (all domains)
Gene: murC

Molecule: UDP-N-acetylmuramate--L-alanine ligase

3D Structure

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Related Domains

Browse other domains in Mur_ligase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupMurCD/PglD N-terminal domain-like(2003.1.8)

FFamilyMur_ligase(2003.1.8.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
DrugBank DB01093
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01225Mur_ligase

Mur ligase family, catalytic domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6X9F RCSB PDB: 6X9F PDBe: 6X9F UniProt: Q9HW02

Downloads

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