ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6x9fF2 - ECOD Domain | ECOD

ECOD/Domains/e6x9fF2

e6x9fF2

UID: 002657289

PDB

Range: F:8-97
PDB: 6X9F chain F(all domains)
UniProt: Q9HW02 (all domains)
Gene: murC

Molecule: UDP-N-acetylmuramate--L-alanine ligase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Mur_ligase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupMurCD/PglD N-terminal domain-like(2003.1.8)

FFamilyMur_ligase(2003.1.8.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
DrugBank DB01093within 5 Å only
1,2-ETHANEDIOLEDO

Pfam Families

PF01225Mur_ligase

Mur ligase family, catalytic domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6X9F RCSB PDB: 6X9F PDBe: 6X9F UniProt: Q9HW02

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.