ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6x9fH2 - ECOD Domain | ECOD

ECOD/Domains/e6x9fH2

e6x9fH2

UID: 002657293

PDB

Range: H:98-311
PDB: 6X9F chain H(all domains)
UniProt: Q9HW02 (all domains)
Gene: murC

Molecule: UDP-N-acetylmuramate--L-alanine ligase

3D Structure

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Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
[(2R)-1-{4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-2H-pyrazolo[3,4-d]pyrimidin-6-yl}piperidin-2-yl]methanolUXP

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6X9F RCSB PDB: 6X9F PDBe: 6X9F UniProt: Q9HW02

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.