ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6y5yJ1 - ECOD Domain | ECOD

ECOD/Domains/e6y5yJ1

e6y5yJ1

UID: 002658690

PDB

Range: J:49-322
PDB: 6Y5Y chain J(all domains)
UniProt: A0A024B5J2 (all domains)
Gene: VP1

Molecule: VP1

3D Structure

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Related Domains

Browse other domains in Polyoma_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyPolyoma_coat(10.2.1.6)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00718Polyoma_coat

Polyomavirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6Y5Y RCSB PDB: 6Y5Y PDBe: 6Y5Y UniProt: A0A024B5J2

Downloads

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