ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6y8nA1 - ECOD Domain | ECOD

ECOD/Domains/e6y8nA1

e6y8nA1

UID: 002658698

PDB

Range: A:20-253
PDB: 6Y8N chain A(all domains)
UniProt: G7CIP8 (all domains)
Gene: gyrB

Molecule: DNA gyrase subunit B

3D Structure

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Related Domains

Browse other domains in HATPase_c →

Classification

AArchitecturea+b two layers(a.11)

XX-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like(225)

HH-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase(225.1)

TT-groupATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase(225.1.1)

FFamilyHATPase_c(225.1.1.3)

Ligands

in contact, ≤ 4 Å

4-[(1~{S},5~{R})-6-azanyl-3-azabicyclo[3.1.0]hexan-3-yl]-6-fluoranyl-~{N}-methyl-2-(2-methylpyrimidin-5-yl)oxy-9~{H}-pyrimido[4,5-b]indol-8-amineOGH
Zinc ionZN
metal

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF02518HATPase_c

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

ClanCL0025His_Kinase_A

External Links

ECOD PDB View: 6Y8N RCSB PDB: 6Y8N PDBe: 6Y8N UniProt: G7CIP8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.