ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ymxA2 - ECOD Domain | ECOD

ECOD/Domains/e6ymxA2

e6ymxA2

UID: 002659345

PDB

Range: A:240-457
PDB: 6YMX chain A(all domains)
UniProt: P07256 (all domains)
Gene: COR1

Molecule: Cytochrome b-c1 complex subunit 1, mitochondrial

3D Structure

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Related Domains

Browse other domains in Peptidase_M16_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupLuxS, MPP, ThrRS/AlaRS common domain(309)

HH-groupLuxS, MPP, ThrRS/AlaRS common domain(309.1)

TT-groupLuxS/MPP-like metallohydrolase(309.1.1)

FFamilyPeptidase_M16_C(309.1.1.4)

Ligands

in contact, ≤ 4 Å

Colfosceril palmitatePCF
drugDrugBank DB09114
(1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate6PH

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05193Peptidase_M16_C

Peptidase M16 inactive domain

ClanCL0094Peptidase_ME

External Links

ECOD PDB View: 6YMX RCSB PDB: 6YMX PDBe: 6YMX UniProt: P07256

Downloads

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