ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ymxE3 - ECOD Domain | ECOD

ECOD/Domains/e6ymxE3

e6ymxE3

UID: 002659362

PDB

Range: E:31-86
PDB: 6YMX chain E(all domains)
UniProt: P08067 (all domains)
Gene: RIP1

Molecule: Cytochrome b-c1 complex subunit Rieske, mitochondrial

3D Structure

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Related Domains

Browse other domains in UCR_TM →

Classification

AArchitectureextended segments(a.20)

XX-groupiron-sulfur subunit (ISP) transmembrane anchor(5014)

HH-groupiron-sulfur subunit (ISP) transmembrane anchor(5014.1)

TT-groupiron-sulfur subunit (ISP) transmembrane anchor(5014.1.1)

FFamilyUCR_TM(5014.1.1.1)

Ligands

in contact, ≤ 4 Å

Colfosceril palmitatePCF
drugDrugBank DB09114
(1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate6PH
(1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate

Pfam Families

Ubiquinol cytochrome reductase transmembrane region

ClanCL0300TAT

External Links

ECOD PDB View: 6YMX RCSB PDB: 6YMX PDBe: 6YMX UniProt: P08067

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoateCN3

within 5 Å only

5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOLUQ6

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.