ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6ymxS1 - ECOD Domain | ECOD

ECOD/Domains/e6ymxS1

e6ymxS1

UID: 002659370

PDB

Range: S:2-94
PDB: 6YMX chain S(all domains)
UniProt: P08525 (all domains)
Gene: QCR8

Molecule: Cytochrome b-c1 complex subunit 8, mitochondrial

3D Structure

Loading viewer...

Related Domains

Browse other domains in UcrQ →

Classification

AArchitectureextended segments(a.20)

XX-groupUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)(5016)

HH-groupUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)(5016.1)

TT-groupUbiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)(5016.1.1)

FFamilyUcrQ(5016.1.1.1)

Ligands

in contact, ≤ 4 Å

(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate8PE
(2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoateCN3

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

UcrQ family

ClanCL0429UcrQ-like

External Links

ECOD PDB View: 6YMX RCSB PDB: 6YMX PDBe: 6YMX UniProt: P08525

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure