ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ysaH2 - ECOD Domain | ECOD

ECOD/Domains/e6ysaH2

e6ysaH2

UID: 002659414

PDB

Range: H:48-325
PDB: 6YSA chain H(all domains)
UniProt: Q39044 (all domains)
Gene: bVPE

Molecule: Vacuolar-processing enzyme beta-isozyme

3D Structure

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Related Domains

Browse other domains in Peptidase_C13 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupCaspase-like(7575)

HH-groupCaspase-like(7575.1)

TT-groupCaspase-like(7575.1.1)

FFamilyPeptidase_C13(7575.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Citric acid, Sulfate ion)

Citric acidCIT
DrugBank DB04272
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01650Peptidase_C13

Peptidase C13 family

ClanCL0093Peptidase_CD

External Links

ECOD PDB View: 6YSA RCSB PDB: 6YSA PDBe: 6YSA UniProt: Q39044

Downloads

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