ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6ysaK1 - ECOD Domain | ECOD

ECOD/Domains/e6ysaK1

e6ysaK1

UID: 002659419

PDB

Range: K:48-325
PDB: 6YSA chain K(all domains)
UniProt: Q39044 (all domains)
Gene: bVPE

Molecule: Vacuolar-processing enzyme beta-isozyme

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_C13 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupCaspase-like(7575)

HH-groupCaspase-like(7575.1)

TT-groupCaspase-like(7575.1.1)

FFamilyPeptidase_C13(7575.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01650Peptidase_C13

Peptidase C13 family

ClanCL0093Peptidase_CD

External Links

ECOD PDB View: 6YSA RCSB PDB: 6YSA PDBe: 6YSA UniProt: Q39044

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure