ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6zmcB1 - ECOD Domain | ECOD

ECOD/Domains/e6zmcB1

e6zmcB1

UID: 002660631

PDB

Range: B:3-201
PDB: 6ZMC chain B(all domains)
UniProt: A0A179QS89 (all domains)
Gene: H0H12_08545

Molecule: tRNA hydroxylase

3D Structure

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Related Domains

Browse other domains in MiaE →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFerritin/Heme oxygenase/4-helical cytokines(150)

HH-groupFerritin/Heme oxygenase(150.1)

TT-groupHeme oxygenase/Ribonucleotide reductase(150.1.2)

FFamilyMiaE(150.1.2.8)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL
FE (III) IONFE

Pfam Families

tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)

ClanCL0044Ferritin

External Links

ECOD PDB View: 6ZMC RCSB PDB: 6ZMC PDBe: 6ZMC UniProt: A0A179QS89

Downloads

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metal

+ 2 additives (Tromethamine, Tetraethylene glycol)

TromethamineTRS
DrugBank DB03754
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.