ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vrgB2 - ECOD Domain | ECOD

ECOD/Domains/e6vrgB2

e6vrgB2

UID: 002663710

PDB

Range: B:47-210
PDB: 6VRG chain B(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metalwithin 5 Å only

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from .

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 6VRG RCSB PDB: 6VRG PDBe: 6VRG UniProt: P12497

Downloads

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