ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6lm1B1 - ECOD Domain | ECOD

ECOD/Domains/e6lm1B1

e6lm1B1

UID: 002667751

PDB

Range: B:0-227
PDB: 6LM1 chain B(all domains)
UniProt: A0A218QMM7 (all domains)

Molecule: Rhodopsin

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

TetradecaneC14
DecaneD10
DodecaneD12
Hexane

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 6LM1 RCSB PDB: 6LM1 PDBe: 6LM1 UniProt: A0A218QMM7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

N-octaneOCT

HexadecaneR16

RetinalRET

Shown in the structure viewer. Drug annotations from DrugDomain.