ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6oppB1 - ECOD Domain | ECOD

ECOD/Domains/e6oppB1

e6oppB1

UID: 002669444

PDB

Range: B:512-547,B:569-664
PDB: 6OPP chain B(all domains)
UniProt: B3UEZ6 (all domains)
Gene: env

Molecule: Envelope glycoprotein gp41

3D Structure

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Related Domains

Browse other domains in GP41 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupMPER trimer(3567)

HH-groupMPER trimer(3567.1)

TT-groupMPER trimer(3567.1.1)

FFamilyGP41(3567.1.1.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral envelope protein

External Links

ECOD PDB View: 6OPP RCSB PDB: 6OPP PDBe: 6OPP UniProt: B3UEZ6

Downloads

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