ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5rm4B2 - ECOD Domain | ECOD

ECOD/Domains/e5rm4B2

e5rm4B2

UID: 002670139

PDB

Range: B:439-593
PDB: 5RM4 chain B(all domains)
UniProt: P0DTD1 (all domains)
Gene: rep

Molecule: Helicase

3D Structure

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Related Domains

Browse other domains in AAA_12 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA_12(2004.1.1.186)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

AAA domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 5RM4 RCSB PDB: 5RM4 PDBe: 5RM4 UniProt: P0DTD1

Downloads

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