ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6tp1A1 - ECOD Domain | ECOD

ECOD/Domains/e6tp1A1

e6tp1A1

UID: 002671125

PDB

Range: A:3-393
PDB: 6TP1 chain A(all domains)
UniProt: I3P686 (all domains)
Gene: amy

Molecule: Amylase

3D Structure

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Related Domains

Browse other domains in Alpha-amylase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAlpha-amylase(2002.1.1.4)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Sodium ionNA
metal

+ 2 additives (Malonate Ion, Acetic acid)

Malonate IonMLI

Pfam Families

PF00128Alpha-amylase

Alpha amylase, catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 6TP1 RCSB PDB: 6TP1 PDBe: 6TP1 UniProt: I3P686

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02201

Acetic acidACY

Shown in the structure viewer. Drug annotations from DrugDomain.