ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6vkvC2 - ECOD Domain | ECOD

ECOD/Domains/e6vkvC2

e6vkvC2

UID: 002672373

PDB

Range: C:146-220
PDB: 6VKV chain C(all domains)
UniProt: P12493 (all domains)
Gene: gag

Molecule: Capsid protein p24

3D Structure

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Related Domains

Browse other domains in Gag_p24_C →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein-C(170.1)

TT-groupRetrovirus capsid protein-C(170.1.1)

FFamilyGag_p24_C(170.1.1.5)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Iodide ionIOD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF19317Gag_p24_C

Gag protein p24 C-terminal domain

ClanCL0148Viral_Gag

External Links

ECOD PDB View: 6VKV RCSB PDB: 6VKV PDBe: 6VKV UniProt: P12493

Downloads

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